Pest Control Programs for Food Manufacturers: FDA Requirements and Best Practices

By
Alex Uspenskyi
August 24, 2026
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A pest control program is a documented set of procedures a food facility uses to exclude, monitor, and eliminate pests from production, processing, packing, and holding areas. Under FDA's Current Good Manufacturing Practice regulation, 21 CFR 117.35(c), the standard isn't "manage pest activity to an acceptable level" — it's that pests must not be allowed in any area of a food plant, and effective measures must be taken to exclude them and protect food from contamination.

What FDA's GMP rule actually requires

21 CFR 117.35 didn't introduce new pest-control regulations when FSMA's preventive controls rule was finalized — it reaffirmed existing Current Good Manufacturing Practices and elevated them from guidance to enforceable requirement. In practice, that means a facility must: exclude pests from the facility through physical barriers (sealed doors, screens, pest-proof construction), eliminate pest harborage in and around the facility, control pest activity through monitoring (traps, bait stations, scheduled inspections) with documented results, and restrict pesticide use in food-production areas to what's permitted under applicable regulations, in a way that doesn't contaminate food.

The 4 pillars of an effective pest control program

Diagram of the 4 pillars of a facility pest control program: exclude, eliminate harborage, monitor, and document and correct
  • Exclude — physical barriers that keep pests from entering: door sweeps, air curtains, sealed conduit penetrations, screened vents.
  • Eliminate harborage — remove the conditions pests need to nest: clutter, standing water, overgrown vegetation near the building, gaps in storage practices.
  • Monitor — traps, bait stations, and scheduled inspections that generate a record, not just a visual walk-through.
  • Document and correct — trend the monitoring data over time and take corrective action when activity increases, rather than only reacting to a live infestation.

In-house program vs. licensed pest control operator

Comparison of in-house pest control programs versus licensed pest control operators for food manufacturers

21 CFR 117.35 does not require a licensed pest control operator — an internal program is legally permissible. In practice, most food manufacturers still contract a professional pest control service, largely because it produces the third-party documentation auditors and GFSI schemes expect to see, and because pesticide application in and around a food plant is easy to get wrong from a regulatory standpoint. An internal program is workable, but it needs to be equally rigorous and equally well documented — FDA and third-party auditors evaluate the program's effectiveness and records, not who happens to be holding the sprayer.

How pest control connects to your HACCP plan and audits

Pest control is typically treated as a prerequisite program supporting your food safety plan, alongside GMP and sanitation programs, rather than a standalone CCP — unless your hazard analysis identifies a specific point where pest contamination is a food safety hazard requiring a Critical Control Point. GFSI-benchmarked schemes like SQF and BRCGS both expect a documented pest control program with trend analysis as part of prerequisite program review, and pest activity trending upward without a documented corrective action is a common audit finding.

See how IONI keeps pest control monitoring records connected to your broader food safety documentation: Food Safety Software.

Frequently asked questions

Does FDA require a licensed pest control operator?

No. 21 CFR 117.35 doesn't mandate a licensed operator — internal pest control programs are permitted — but the program must be documented and effective regardless of who runs it.

Can pesticides be used in food production areas?

Pesticide use is restricted in food-production areas and must comply with applicable regulations in a way that prevents contamination of food. Most facilities limit pesticide application to non-production zones and use physical traps or bait stations in production areas.

Is pest control a Critical Control Point?

Usually not — it's typically managed as a prerequisite program rather than a CCP. It can become a CCP if a facility's specific hazard analysis identifies a process step where pest-related contamination can't be controlled any other way.

How often should pest monitoring stations be checked?

There's no single FDA-mandated frequency; the right interval depends on your facility's risk profile and is typically set by your pest control program and verified during internal and third-party audits. What matters to auditors is that checks happen on a documented, consistent schedule.

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